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## [1] "Proportion of variance contributed by first 5 principal components in ICBP gene expression data: 0.427196248976044"
## [1] "Proportion of variance contributed by first 5 principal components in TCGA BRCA gene expression data: 0.343182614266816"
## [1] "733 names have been changed"
## [1] "analyzing BIM"
## [1] "BIM data available"
## [1] "analyzing BAD"
## [1] "BAD data available"
## [1] "analyzing MCL1"
Protein based pathway validations codes are in ./ASSIGN folder. Gene expression, mutation and IHC-based validations are shown here.
## [1] "757 names have been changed"
## [1] "517 names have been changed"
## [1] "Spearman correlation of PC1 and mean gene expression of each sample: -0.786414519142557"
This analysis was run on Thu Jun 30 10:33:28 2016